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From greve at lowtem.hokudai.ac.jp Fri Jun 5 11:59:28 2015
From: greve at lowtem.hokudai.ac.jp (Ralf Greve)
Date: Fri, 05 Jun 2015 18:59:28 +0900
Subject: [SICOPOLIS:34] Migration to AWI's new FusionForge installation
Message-ID: <55717300.3080200@lowtem.hokudai.ac.jp>
Dear colleagues,
the Alfred Wegener Institute for Polar and Marine Research (AWI), who
kindly hosts SICOPOLIS, will take down their current GForge system
on 30 June. It is currently being replaced by a
new FusionForge installation .
This means that SICOPOLIS must be migrated to the new system. I will do
this over the next week or two and keep you posted. My apologies for the
inconvenience!
Best regards
Ralf
--
Dr. Ralf Greve
Professor, Glacier and Ice Sheet Research
Institute of Low Temperature Science
Hokkaido University
Kita-19, Nishi-8, Kita-ku
Sapporo 060-0819, Japan
Phone: (+81)-(0)11-706-6891
greve at lowtem.hokudai.ac.jp
http://wwwice.lowtem.hokudai.ac.jp/~greve/
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From greve at lowtem.hokudai.ac.jp Tue Jun 9 09:24:47 2015
From: greve at lowtem.hokudai.ac.jp (Ralf Greve)
Date: Tue, 09 Jun 2015 16:24:47 +0900
Subject: [SICOPOLIS:35] This Thursday migration to AWI's new FusionForge
system
Message-ID: <557694BF.1040203@lowtem.hokudai.ac.jp>
Dear sicommunity, [ = SICOPOLIS community... ;-) ]
as I already announced last Friday, SICOPOLIS will be migrated from
AWI's current GForge system to the new
FusionForge system . This concerns the
subversion repository and the mailing lists.
After consulting with Christian Sch?fer-Neth and some testing, we
decided that the migration will be done this Thursday (June 11) between
08:00 and 22:00 CEST (06:00-20:00 GMT). So, in order to avoid any
losses, please do not use the current subversion repository (code
checkout, update or commit), and do not post anything to the current
mailing lists (sicopolis-general, sicopolis-commits) after June 11 07:00
CEST (05:00 GMT).
Let's hope that everything goes smoothly. When the migration is done, I
will inform you about the new location of the subversion repository and
the new addresses of the mailing lists.
Again, my apologies for the inconvenience!
Best regards
Ralf
--
Dr. Ralf Greve
Professor, Glacier and Ice Sheet Research
Institute of Low Temperature Science
Hokkaido University
Kita-19, Nishi-8, Kita-ku
Sapporo 060-0819, Japan
Phone: (+81)-(0)11-706-6891
greve at lowtem.hokudai.ac.jp
http://wwwice.lowtem.hokudai.ac.jp/~greve/
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From greve at lowtem.hokudai.ac.jp Thu Jun 11 07:26:38 2015
From: greve at lowtem.hokudai.ac.jp (Ralf Greve)
Date: Thu, 11 Jun 2015 14:26:38 +0900
Subject: [SICOPOLIS:36] Reminder: Today migration to AWI's new FusionForge
system
Message-ID: <55791C0E.8080502@lowtem.hokudai.ac.jp>
Dear sicommunity, [ = SICOPOLIS community... ;-) ]
just as a reminder: Today Christian Sch?fer-Neth will kindly migrate the
subversion repository and the mailing lists of SICOPOLIS to AWI's new
FusionForge system .
!!! From now on, please do not use the current repository and mailing
lists any more. !!!
I will keep you posted. Thanks a lot for your cooperation.
Best regards
Ralf
--
Dr. Ralf Greve
Professor, Glacier and Ice Sheet Research
Institute of Low Temperature Science
Hokkaido University
Kita-19, Nishi-8, Kita-ku
Sapporo 060-0819, Japan
Phone: (+81)-(0)11-706-6891
greve at lowtem.hokudai.ac.jp
http://wwwice.lowtem.hokudai.ac.jp/~greve/
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From greve at lowtem.hokudai.ac.jp Thu Jun 11 11:33:19 2015
From: greve at lowtem.hokudai.ac.jp (Ralf Greve)
Date: Thu, 11 Jun 2015 18:33:19 +0900
Subject: [SICOPOLIS:37] New mailing lists
In-Reply-To:
References:
Message-ID: <557955DF.2070309@lowtem.hokudai.ac.jp>
Dear colleagues,
you should meanwhile have received welcome mails for the new mailing
lists. In order to post to sicopolis-general, from now on please send
your messages to
sicopolis-general at lists.swrepo1.awi.de
The former address sicopolis-general at aforge.awi.de should not work any more.
Best regards,
Ralf
--
Dr. Ralf Greve
Professor, Glacier and Ice Sheet Research
Institute of Low Temperature Science
Hokkaido University
Kita-19, Nishi-8, Kita-ku
Sapporo 060-0819, Japan
Phone: (+81)-(0)11-706-6891
greve at lowtem.hokudai.ac.jp
http://wwwice.lowtem.hokudai.ac.jp/~greve/
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From greve at lowtem.hokudai.ac.jp Fri Jun 12 04:42:17 2015
From: greve at lowtem.hokudai.ac.jp (Ralf Greve)
Date: Fri, 12 Jun 2015 11:42:17 +0900
Subject: [SICOPOLIS:38] Migration to AWI's new FusionForge system completed
Message-ID: <557A4709.6010300@lowtem.hokudai.ac.jp>
Dear sicommunity,
the migration of SICOPOLIS to AWI's new FusionForge system is completed.
We owe Christian Sch?fer-Neth and his colleagues a great thanks for
managing this!
As far as I can tell, everything seems to be working fine. Please find
some instructions below.
(1) If you want to check out a new working copy of SICOPOLIS anonymously:
svn checkout --username anonsvn \
https://swrepo1.awi.de/svn/sicopolis/trunk sicopolis
(the password is anonsvn).
(2) If you want to relocate an existing working copy:
Go to the top-level directory of the working copy (probably
"sicopolis"), then:
svn relocate https://swrepo1.awi.de/svn/sicopolis/trunk
(for pre-1.7 versions of subversion, use svn switch --relocate instead).
(3) If you are a developer with a user name:
First, please visit and register a new account
(link at the top-right).
One you have it, please inform me. I will then enter you again as a
developer (with the right to commit code to the repository).
After that, you can do (1) or (2) with your own user name instead of
anonsvn.
(4) If you do not work with the trunk ("bleeding edge"), but rather with
a tagged version or your own branch, in the above commands please
replace "trunk" by either "tags/version_number" or "branches/your_branch".
Good luck! :-) Of course, if anything is unclear, doesn't work etc.,
please ask.
I will update the online documentation as soon as possible.
Best regards,
Ralf
--
Dr. Ralf Greve
Professor, Glacier and Ice Sheet Research
Institute of Low Temperature Science
Hokkaido University
Kita-19, Nishi-8, Kita-ku
Sapporo 060-0819, Japan
Phone: (+81)-(0)11-706-6891
greve at lowtem.hokudai.ac.jp
http://wwwice.lowtem.hokudai.ac.jp/~greve/
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From greve at lowtem.hokudai.ac.jp Tue Jun 23 16:00:53 2015
From: greve at lowtem.hokudai.ac.jp (Ralf Greve)
Date: Tue, 23 Jun 2015 16:00:53 +0200
Subject: [SICOPOLIS:39] Changes in the shell scripts
Message-ID: <55896695.1000904@lowtem.hokudai.ac.jp>
Dear sicommunity,
just a short comment on revision 588 (changes in the scripts *.sh):
I am currently working on making the old *.job scripts obsolete.
Instead, the two possibilities (manual configuration vs. configuration
by GNU Autotools) will be united in the more sophisticated *.sh scripts.
For now, please don't bother (I'll explain later in detail, along with
an update of the documentation); everything should work as before. Only
one small thing: If you use sico.sh, after an svn update, copy the
latest version in /sicopolis/runs/templates to
/sicopolis/runs (from where it can be executed as usual).
Otherwise, the system will complain about the deleted script error.sh
(that was required for previous versions of sico.sh, but not for the new
one any more).
If there are any problems, please let me know.
Thanks & best regards,
Ralf
--
Dr. Ralf Greve
Professor, Glacier and Ice Sheet Research
Institute of Low Temperature Science
Hokkaido University
Kita-19, Nishi-8, Kita-ku
Sapporo 060-0819, Japan
Phone: (+81)-(0)11-706-6891
greve at lowtem.hokudai.ac.jp
http://wwwice.lowtem.hokudai.ac.jp/~greve/
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From greve at lowtem.hokudai.ac.jp Thu Jun 25 16:11:09 2015
From: greve at lowtem.hokudai.ac.jp (Ralf Greve)
Date: Thu, 25 Jun 2015 16:11:09 +0200
Subject: [SICOPOLIS:40] Changes in the shell scripts: explanation
Message-ID: <558C0BFD.80908@lowtem.hokudai.ac.jp>
Dear colleagues,
as I announced a few days ago, here comes the explanation of the changes
of the scripts sico.sh, tools.sh and sicograph.sh.
Let's start with sico.sh. So far, this was the one to be used when
SICOPOLIS was built with the GNU Autotools (which requires an initial
execution of autogen.sh, as explained in the INSTALL file). For example,
in order to run simulation v32_emtp2sge25_expA, it must be executed as
follows:
(./sico.sh -m v32_emtp2sge25_expA) >out_001.dat 2>&1 &
This still works as before. The new thing is that sico.sh can now also
be used for manual configuration (without the GNU Autotools). For that
case, the configuration must be done once in the new file
sico_configs.sh as follows:
(1) svn update to the latest revision of SICOPOLIS.
(2) Make local copies of sico.sh and sico_configs.sh:
cp /runs/templates/sico*.sh \
/runs/
(3) Open the local copy /runs/sico_configs.sh with
a text editor.
(4) Set the flags NETCDF_FLAG, LIS_FLAG, OPENMP_FLAG and LARGE_DATA_FLAG
according to your needs. Pre-selected is NETCDF_FLAG='yes' (with netCDF)
and the rest 'no'.
[For Antarctica simulations with ice shelves, LIS_FLAG and OPENMP_FLAG
must both be set to 'yes'. For high-resolution simulations (e.g.,
Greenland 5 km or Antarctica 10 km), LARGE_DATA_FLAG must be set to 'yes'.]
If NETCDF_FLAG='yes', set NETCDFHOME to the correct path.
If LIS_FLAG='yes', set LISHOME to the correct path.
Then, in order to run simulation v32_emtp2sge25_expA:
(./sico.sh -z -m v32_emtp2sge25_expA) >out_001.dat 2>&1 &
The difference to the above command is the -z option. This tells sico.sh
that manual configuration has been done, and it will source the
sico_configs.sh file to get the relevant information.
The same holds for tools.sh and sicograph.sh. If SICOPOLIS was built
with the GNU Autotools, they work as before. For manual configuration,
simply add the -z option. For example:
./tools.sh -z -p resolution_doubler -m v32_emtp2sge25_expA
./sicograph.sh -z -m v32_emtp2sge25_expA
The old *.job scripts are now obsolete. I will not support them any
more, and I encourage you to use the new scripts. However, of course the
old ones still work, and for the time being I will keep them in the
subversion repository.
I hope you'll find the changes useful. And, as always, if there are any
troubles, please drop me a line.
Thanks & best regards,
Ralf
--
Dr. Ralf Greve
Professor, Glacier and Ice Sheet Research
Institute of Low Temperature Science
Hokkaido University
Kita-19, Nishi-8, Kita-ku
Sapporo 060-0819, Japan
Phone: (+81)-(0)11-706-6891
greve at lowtem.hokudai.ac.jp
http://wwwice.lowtem.hokudai.ac.jp/~greve/
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